Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THCA | rs6547885 | chr2:29077531 | A/G | 9.57E-5 | 490 | 14.98 | 17.03 | 15.9 | KM Plot |
THCA | rs6547886 | chr2:29077655 | A/G | 9.57E-5 | 490 | 14.98 | 17.03 | 15.9 | KM Plot |
THCA | rs6547887 | chr2:29124426 | A/G | 0.000111 | 488 | 14.3 | 15.22 | 16.2 | KM Plot |
THCA | rs6547888 | chr2:29124427 | T/A | 0.000111 | 488 | 14.3 | 15.22 | 16.2 | KM Plot |
THCA | rs6547889 | chr2:29128322 | A/G | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
THCA | rs6547890 | chr2:29128622 | T/C | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
THCA | rs6563998 | chr16:84138953 | G/C | 0 | 478 | 5.8 | 18.13 | 15.7 | KM Plot |
THCA | rs6569847 | chr6:133083187 | C/A | 1.4E-6 | 479 | 15.67 | 15.7 | 17.77 | KM Plot |
THCA | rs6569848 | chr6:133087432 | A/G | 1.11E-6 | 486 | 15.75 | 16.2 | 17.77 | KM Plot |
THCA | rs6570301 | chr6:139354482 | C/T | 0.00014 | 490 | 7.87 | 16.63 | 15.68 | KM Plot |
THCA | rs6570302 | chr6:139354692 | C/T | 0.00014 | 490 | 7.87 | 16.63 | 15.68 | KM Plot |
THCA | rs6574411 | chr14:78374327 | G/A | 4.15E-6 | 480 | 15.68 | 16.62 | 14.03 | KM Plot |
THCA | rs6578446 | chr11:4168641 | C/T | 1.74E-7 | 490 | 16.38 | 13.9 | 19.05 | KM Plot |
THCA | rs6600366 | chr1:41559612 | C/T | 3.69E-12 | 488 | 17.7 | 17.75 | 14.93 | KM Plot |
THCA | rs66482646 | chr7:75883434 | A/G | 0.000109 | 486 | 16.37 | 16.57 | 11.77 | KM Plot |